资源类型

期刊论文 1552

年份

2024 1

2023 62

2022 103

2021 106

2020 73

2019 108

2018 88

2017 85

2016 68

2015 87

2014 83

2013 64

2012 82

2011 73

2010 74

2009 49

2008 73

2007 89

2006 35

2005 24

展开 ︾

关键词

风险分析 9

分析 4

可持续发展 4

对策 4

影响因素 4

数值模拟 4

隧道 4

ANSYS 3

COVID-19 3

数值分析 3

裂缝 3

2035年 2

BNLAS 2

DX桩 2

HIV感染孕产妇 2

“一带一路” 2

专利分析 2

仿真 2

制造业 2

展开 ︾

检索范围：

排序： 展示方式：

Anaerobic digestion of sludge by different pretreatments: Changes of amino acids and microbial community

《环境科学与工程前沿（英文）》 2022年 第16卷 第2期 doi: 10.1007/s11783-021-1458-7

摘要：

•Tryptophan protein, and aromatic protein I/II were the key identified proteins.

关键词： Sludge pretreatments     Dissolved organic nitrogen     Proteins     Amino acids     Structural equation model     Metagenomic sequencing analysis.    

HTML PDF 收藏

Metagenomic analysis on resistance genes in water and microplastics from a mariculture system

《环境科学与工程前沿（英文）》 2022年 第16卷 第1期   页码 4-4 doi: 10.1007/s11783-021-1438-y

摘要：

Microplastics existing widely in different matrices have been regarded as a reservoir for emerging contaminants. Mariculture systems have been observed to host microplastics and antibiotic resistance genes (ARGs). However, more information on proliferation of ARGs and metal resistance genes (MRGs) in mariculture system at the presence of microplastics is needed.

关键词： Antibiotic resistance genes     Metal resistance genes     Metagenomic analysis     Microplastics     Mariculture    

HTML PDF 收藏

Plastic materials and water sources actively select and shape wastewater plastispheres over time

《环境科学与工程前沿（英文）》 2022年 第16卷 第11期 doi: 10.1007/s11783-022-1580-1

摘要：

● Wastewater MPs exhibited resistomes and therefore health threats.

关键词： Microplastics     Whole-genome metagenomic sequencing     Plastisphere     Plastic degradation     MHETase    

HTML PDF 收藏

Insights from metagenomic, metatranscriptomic, and molecular ecological network analyses into the effects

Quan Zheng, Minglu Zhang, Tingting Zhang, Xinhui Li, Minghan Zhu, Xiaohui Wang

《环境科学与工程前沿（英文）》 2020年 第14卷 第4期 doi: 10.1007/s11783-020-1239-8

摘要： Abstract • Cr NPs significantly promoted the denitrifying process and phosphorus removal. • The quantities of denitrifying and phosphorus genes greatly increased. • The transcription of denitrifying and phosphorus genes greatly increased. • The networks associated with nitrogen and phosphorus removal became complicated. • Cr NPs decreased some genera related to GAOs. The objectives of this study were to investigate the influence of chromium nanoparticles (Cr NPs) on the nitrogen and phosphorus removal performance and the bacterial structures of an activated sludge (AS) system. Also, we through molecular ecological networks (MENs) discussed the bacterial interactions. At last we researched the change of the functional genes and their expression patterns related to nitrogen and phosphorus removal in an AS system. The results showed that long-term exposure to 1 mg/L Cr NPs significantly promoted the denitrifying process and phosphorus removal in the AS system. The relative abundance of denitrifying and phosphorus removal microorganisms, such as Denitratisoma, Thauera, Dechloromonas, and Defluviicoccus, increased significantly. Candidatus Accumulibacter, well-known as polyphosphate-accumulating organisms (PAOs), increased significantly; the relative abundance of Candidatus Competibacter, known as glycogen-accumulating organisms (GAOs), decreased significantly. Furthermore, metagenomic and metatranscriptomic analysis revealed that most of the genera related to denitrifying and phosphorus removal had greatly increased, according to the quantities of denitrifying and phosphorus genes, and the corresponding transcription likewise greatly increased. Lastly, MENs analysis showed that although the overall network became smaller and looser in the presence of Cr NPs, the microbial connections among members related to nitrogen and phosphorus removal were enhanced. The abundance increases of denitrifiers and PAOs, and their increased transcription of functional genes, together with the enhanced interactions may be associated with the promotion of the denitrifying process and phosphorus removal.

关键词： Chromium nanoparticles (Cr NPs)     Metagenomic analysis     Metatranscriptomic analysis     Molecular ecological networks (MENs)     Nitrogen and phosphorus removal    

HTML PDF 收藏

Genome-resolved metagenomic analysis reveals different functional potentials of multiple Brocadia species

《环境科学与工程前沿（英文）》 2023年 第17卷 第1期 doi: 10.1007/s11783-023-1602-7

摘要：

● Four Ca. Brocadia species were observed during the spontaneously enrichment.

关键词： Anammox     Candidatus Brocadia     Functional potential     Cooccurring mechanisms     Swine wastewater treatment facilities    

HTML PDF 收藏

Comparative analysis of impact of human occupancy on indoor microbiomes

《环境科学与工程前沿（英文）》 2021年 第15卷 第5期 doi: 10.1007/s11783-020-1383-1

摘要：

• Exposure to indoor microbiomes is a public health concern in educational facilities.

关键词： Built environment     Indoor microbiome     Occupant     Building     Sequencing    

HTML PDF 收藏

Analysis of the genomic landscape of primary central nervous system lymphoma using whole-genome sequencing

《医学前沿（英文）》   页码 889-906 doi: 10.1007/s11684-023-0994-x

摘要： Primary central nervous system lymphoma (PCNSL) is an uncommon non-Hodgkin’s lymphoma with poor prognosis. This study aimed to depict the genetic landscape of Chinese PCNSLs. Whole-genome sequencing was performed on 68 newly diagnosed Chinese PCNSL samples, whose genomic characteristics and clinicopathologic features were also analyzed. Structural variations were identified in all patients with a mean of 349, which did not significantly influence prognosis. Copy loss occurred in all samples, while gains were detected in 77.9% of the samples. The high level of copy number variations was significantly associated with poor progression-free survival (PFS) and overall survival (OS). A total of 263 genes mutated in coding regions were identified, including 6 newly discovered genes (ROBO2, KMT2C, CXCR4, MYOM2, BCLAF1, and NRXN3) detected in ≥ 10% of the cases. CD79B mutation was significantly associated with lower PFS, TMSB4X mutation and high expression of TMSB4X protein was associated with lower OS. A prognostic risk scoring system was also established for PCNSL, which included Karnofsky performance status and six mutated genes (BRD4, EBF1, BTG1, CCND3, STAG2, and TMSB4X). Collectively, this study comprehensively reveals the genomic landscape of newly diagnosed Chinese PCNSLs, thereby enriching the present understanding of the genetic mechanisms of PCNSL.

关键词： primary central nervous system lymphoma     whole-genome sequencing     TMSB4X     copy number variation     gene mutation    

HTML PDF 收藏

Identification of cancer gene fusions based on advanced analysis of the human genome or transcriptome

null

《医学前沿（英文）》 2013年 第7卷 第3期   页码 280-289 doi: 10.1007/s11684-013-0265-3

摘要：

Many gene fusions have been recognized as important diagnostic and/or prognostic markers in human malignancies. In recent years, novel gene fusions have been identified in cases without prior knowledge of the genetic background. Accompanied by a powerful computational data analysis method, new genome-wide screening approaches were used to detect cryptic genomic aberrations. This review focused on advanced genome-wide screening approaches in fusion gene identification, such as microarray-based approaches, next-generation sequencing, and NanoString nCounter gene expression system. The fundamental rationale and strategy for fusion gene identification using each biotech platform are also discussed.

关键词： gene fusion     cancer     microarray     next-generation sequencing     NanoString nCounter system    

HTML PDF 收藏

Application of machine learning technique for predicting and evaluating chloride ingress in concrete

Van Quan TRAN; Van Loi GIAP; Dinh Phien VU; Riya Catherine GEORGE; Lanh Si HO

《结构与土木工程前沿（英文）》 2022年 第16卷 第9期   页码 1153-1169 doi: 10.1007/s11709-022-0830-4

摘要： The degradation of concrete structure in the marine environment is often related to chloride-induced corrosion of reinforcement steel. Therefore, the chloride concentration in concrete is a vital parameter for estimating the corrosion level of reinforcement steel. This research aims at predicting the chloride content in concrete using three hybrid models of gradient boosting (GB), artificial neural network (ANN), and random forest (RF) in combination with particle swarm optimization (PSO). The input variables for modeling include exposure condition, water/binder ratio (W/B), cement content, silica fume, time exposure, and depth of measurement. The results indicate that three models performed well with high accuracy of prediction (R2 ≥ 0.90). Among three hybrid models, the model using GB_PSO achieved the highest prediction accuracy (R2 = 0.9551, RMSE = 0.0327, and MAE = 0.0181). Based on the results of sensitivity analysis using SHapley Additive exPlanation (SHAP) and partial dependence plots 1D (PDP-1D), it was found that the exposure condition and depth of measurement were the two most vital variables affecting the prediction of chloride content. When the number of different exposure conditions is larger than two, the exposure significantly impacted the chloride content of concrete because the chloride ion ingress is affected by both chemical and physical processes. This study provides an insight into the evaluation and prediction of the chloride content of concrete in the marine environment.

关键词： gradient boosting     random forest     chloride content     concrete     sensitivity analysis.    

HTML PDF 收藏

A chemometric analysis on the fluorescent dissolved organic matter in a full-scale sequencing batch reactor

Chen Qian, Wei Chen, Wei-Hua Li, Han-Qing Yu

《环境科学与工程前沿（英文）》 2017年 第11卷 第4期 doi: 10.1007/s11783-017-0962-2

摘要： Rapid monitoring of water quality is crucial to the operation of municipal wastewater treatment plants (WWTPs). Fluorescence excitation-emission matrix (EEM) in combination with parallel factor analysis (PARAFAC) has been used as a powerful tool for the characterization of dissolved organic matter (DOM) in WWTPs. However, a recent work has revealed the drawback of PARAFAC analysis, i.e., overestimating the component number. A novel method, parallel factor framework-clustering analysis (PFFCA), has been developed in our earlier work to resolve this drawback of PARAFAC. In the present work, both PARAFAC and PFFCA were used to analyze the EEMs of water samples from a full-scale WWTP from a practical application point of view. The component number and goodness-of-fit from these two methods were compared and the relationship between the relative score change of component and the actual concentration was investigated to evaluate the estimation error introduced by both methods. PFFCA score and actual concentration exhibited a higher correlation coefficient ( = 0.870) compared with PARAFAC ( <0.771), indicating that PFFCA provided a more accurate relative change estimation than PARAFAC. The results suggest that use of PARAFAC may cause confusion in selecting the component number, while EEM-PFFCA is a more reliable alternative approach for monitoring water quality in WWTPs.

关键词： Wastewater treatment plants (WWTPs)     Excitation-emission matrix (EEM)     Parallel factor (PARAFAC)     Parallel factor framework-clustering analysis (PFFCA)    

HTML PDF 收藏

Exome sequencing greatly expedites the progressive research of Mendelian diseases

null

《医学前沿（英文）》 2014年 第8卷 第1期   页码 42-57 doi: 10.1007/s11684-014-0303-9

摘要：

The advent of whole-exome sequencing (WES) has facilitated the discovery of rare structure and functional genetic variants. Combining exome sequencing with linkage studies is one of the most efficient strategies in searching disease genes for Mendelian diseases. WES has achieved great success in the past three years for Mendelian disease genetics and has identified over 150 new Mendelian disease genes. We illustrate the workflow of exome capture and sequencing to highlight the advantages of WES. We also indicate the progress and limitations of WES that can potentially result in failure to identify disease-causing mutations in part of patients. With an affordable cost, WES is expected to become the most commonly used tool for Mendelian disease gene identification. The variants detected cumulatively from previous WES studies will be widely used in future clinical services.

关键词： genetics     whole-exome sequencing     Mendelian disease     disease gene    

HTML PDF 收藏

Accurate quantification of 3′-terminal 2′-O-methylated small RNAs by utilizing oxidative deep sequencing

《医学前沿（英文）》 2022年 第16卷 第2期   页码 240-250 doi: 10.1007/s11684-021-0909-7

摘要： The continuing discoveries of novel classes of RNA modifications in various organisms have raised the need for improving sensitive, convenient, and reliable methods for quantifying RNA modifications. In particular, a subset of small RNAs, including microRNAs (miRNAs) and Piwi-interacting RNAs (piRNAs), are modified at their 3′-terminal nucleotides via 2′-O-methylation. However, quantifying the levels of these small RNAs is difficult because 2′-O-methylation at the RNA 3′-terminus inhibits the activity of polyadenylate polymerase and T4 RNA ligase. These two enzymes are indispensable for RNA labeling or ligation in conventional miRNA quantification assays. In this study, we profiled 3′-terminal 2′-O-methyl plant miRNAs in the livers of rice-fed mice by oxidative deep sequencing and detected increasing amounts of plant miRNAs with prolonged oxidation treatment. We further compared the efficiency of stem-loop and poly(A)-tailed RT-qPCR in quantifying plant miRNAs in animal tissues and identified stem-loop RT-qPCR as the only suitable approach. Likewise, stem-loop RT-qPCR was superior to poly(A)-tailed RT-qPCR in quantifying 3′-terminal 2′-O-methyl piRNAs in human seminal plasma. In summary, this study established a standard procedure for quantifying the levels of 3′-terminal 2′-O-methyl miRNAs in plants and piRNAs. Accurate measurement of the 3′-terminal 2′-O-methylation of small RNAs has profound implications for understanding their pathophysiologic roles in biological systems.

关键词： small RNAs     2′-O-methylation     sequencing     RT-qPCR    

HTML PDF 收藏

TCGA whole-transcriptome sequencing data reveals significantly dysregulated genes and signaling pathways

null

《医学前沿（英文）》 2015年 第9卷 第3期   页码 322-330 doi: 10.1007/s11684-015-0408-9

摘要：

This study systematically evaluates the TCGA whole-transcriptome sequencing data of hepatocellular carcinoma (HCC) by comparing the global gene expression profiles between tumors and their corresponding non-tumorous liver tissue. Based on the differential gene expression analysis, we identified a number of novel dysregulated genes, in addition to those previously reported. Top-listing upregulated (CENPF and FOXM1) and downregulated (CLEC4G, CRHBP, and CLEC1B) genes were successfully validated using qPCR on our cohort of 65 pairs of human HCCs. Further examination for the mechanistic overview by subjecting significantly upregulated and downregulated genes to gene set enrichment analysis showed that different cellular pathways were involved. This study provides useful information on the transcriptomic landscape and molecular mechanism of hepatocarcinogenesis for development of new biomarkers and further in-depth characterization.

关键词： TCGA     whole-transcriptome sequencing     HCC     liver cancer    

HTML PDF 收藏

Exploring the cancer genome in the era of next-generation sequencing

null

《医学前沿（英文）》 2012年 第6卷 第1期   页码 48-55 doi: 10.1007/s11684-012-0182-x

摘要：

The emergence of next-generation sequencing technologies has led to dramatic advances in cancer genome studies. The increased efficiency and resolution of next-generation sequencing greatly facilitate the detection of genetic, genomic, and epigenomic alterations, such as single nucleotide mutations, small insertions and deletions, chromosomal rearrangements, copy number variations, and DNA methylation. Comprehensive analysis of cancer genomes through approaches of whole genome, exome, and transcriptome sequencing has significantly improved the understanding of cancer biology, diagnosis, and therapy. The present study briefly reviews the recent pioneering studies on cancer genome sequencing and provides an unprecedented insight into the landscape of genomic alterations in human sporadic cancers.

关键词： next-generation sequencing     cancer genome     whole genome sequencing     exome     transcriptome    

HTML PDF 收藏

Comparative study on microbial community in intermittently aerated sequencing batch reactors (SBR) and

Xiaolin Sheng, Rui Liu, Xiaoyan Song, Lujun Chen, Kawagishi Tomoki

《环境科学与工程前沿（英文）》 2017年 第11卷 第3期 doi: 10.1007/s11783-017-0929-3

摘要： A traditional sequencing batch reactor (SBR) and two intermittently aerated sequencing batch reactors (IASBRs) were parallelly operated for treating digested piggery wastewater. Their microbial communities were analyzed, and the nitrogen removal performance was compared during the long–term run. IASBRs demonstrated higher removal rates of total nitrogen (TN) and ammonium nitrogen (NH -N) than the SBR, and also demonstrated higher resistance against TN shock load. It was found that the more switch times between aerobic/anoxic in an IASBR, the higher the removal rates of TN and NH –N. All the reactors were predominated by , and , which were considered to be species of denitrifiers, ammonium oxidizing bacteria (AOB) and nitrite oxidizing bacteria (NOB), respectively. However, the abundance and diversity was of great difference. Compared with SBR, IASBRs achieved higher abundance of denitrification–related bacteria. IASBR 1 with four aerobic/anoxic switch times was detected with 25.63% of , higher than that in IASBR 2 with two aerobic/anoxic switch times (11.57% of ), and much higher than that in the SBR (only 6.19% of ). IASBR 2 had the highest percentage of AOB, while IASBR 1 had the lowest percentage. The denitrifiers abundance was significantly positive correlated with the TN removal rate. However, the NH –N removal rate showed no significant correlation with the AOB abundance, but might relate to the AOB activity which was influenced by the average free ammonium (FA) concentration. was the only NOB genus detectable in all reactors, and were less than 0.03%.

关键词： Digested piggery wastewater     Intermittent aeration     Microbial community     Partial nitrification–denitrification process     Sequencing batch reactor (SBR)    

HTML PDF 收藏

标题 作者 时间 类型 操作

Anaerobic digestion of sludge by different pretreatments: Changes of amino acids and microbial community

期刊论文

Metagenomic analysis on resistance genes in water and microplastics from a mariculture system

期刊论文

Plastic materials and water sources actively select and shape wastewater plastispheres over time

期刊论文

Insights from metagenomic, metatranscriptomic, and molecular ecological network analyses into the effects

Quan Zheng, Minglu Zhang, Tingting Zhang, Xinhui Li, Minghan Zhu, Xiaohui Wang

期刊论文

Genome-resolved metagenomic analysis reveals different functional potentials of multiple Brocadia species

期刊论文

Comparative analysis of impact of human occupancy on indoor microbiomes

期刊论文

Analysis of the genomic landscape of primary central nervous system lymphoma using whole-genome sequencing

期刊论文

Identification of cancer gene fusions based on advanced analysis of the human genome or transcriptome

null

期刊论文

Application of machine learning technique for predicting and evaluating chloride ingress in concrete

Van Quan TRAN; Van Loi GIAP; Dinh Phien VU; Riya Catherine GEORGE; Lanh Si HO

期刊论文

A chemometric analysis on the fluorescent dissolved organic matter in a full-scale sequencing batch reactor

Chen Qian, Wei Chen, Wei-Hua Li, Han-Qing Yu

期刊论文

Exome sequencing greatly expedites the progressive research of Mendelian diseases

null

期刊论文

Accurate quantification of 3′-terminal 2′-O-methylated small RNAs by utilizing oxidative deep sequencing

期刊论文

TCGA whole-transcriptome sequencing data reveals significantly dysregulated genes and signaling pathways

null

期刊论文

Exploring the cancer genome in the era of next-generation sequencing

null

期刊论文

Comparative study on microbial community in intermittently aerated sequencing batch reactors (SBR) and

Xiaolin Sheng, Rui Liu, Xiaoyan Song, Lujun Chen, Kawagishi Tomoki

期刊论文